{
  "_id": "6abe309e99f7aa8c6aa53735",
  "Package": "ptmixed",
  "Title": "Poisson-Tweedie Generalized Linear Mixed Model",
  "Version": "1.1.3",
  "Authors@R": "c(\nperson(\"Mirko\", \"Signorelli\", , \"msignorelli.rpackages@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-8102-3356\")),\nperson(\"Pietro\", \"Spitali\", , \"p.spitali@lumc.nl\", role = \"ctb\"),\nperson(\"Roula\", \"Tsonaka\", , \"s.tsonaka@lumc.nl\", role = \"ctb\")\n)",
  "Description": "Fits the Poisson-Tweedie generalized linear mixed model\ndescribed in Signorelli et al. (2021,\n<doi:10.1177/1471082X20936017>). Likelihood approximation based\non adaptive Gauss Hermite quadrature rule.",
  "License": "GPL-3",
  "URL": "https://mirkosignorelli.github.io/r",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-01 10:02:32 UTC",
    "User": "root"
  },
  "Author": "Mirko Signorelli [aut, cre, cph]\n(<https://orcid.org/0000-0002-8102-3356>), Pietro Spitali\n[ctb], Roula Tsonaka [ctb]",
  "Maintainer": "Mirko Signorelli <msignorelli.rpackages@gmail.com>",
  "Config/pak/sysreqs": "cmake make",
  "Repository": "https://m-signo.r-universe.dev",
  "Date/Publication": "2022-08-18 11:00:02 UTC",
  "RemoteUrl": "https://github.com/cran/ptmixed",
  "RemoteRef": "HEAD",
  "RemoteSha": "44ef465c2c989c25a6248f5541a689577db81cc8",
  "_user": "m-signo",
  "_type": "src",
  "_file": "ptmixed_1.1.3.tar.gz",
  "_fileid": "https://r2.ropensci.org/548a369cfefdcba742466f8248ccb4f57d786cbf4720b1c2d9813856b3a83042",
  "_filesize": 329307,
  "_sha256": "548a369cfefdcba742466f8248ccb4f57d786cbf4720b1c2d9813856b3a83042",
  "_expires": "2027-01-09T10:06:20.000Z",
  "_created": "2026-10-01T10:02:32.000Z",
  "_published": "2026-10-01T10:06:21.891Z",
  "_jobs": [
    {
      "job": 110318238603,
      "time": 142,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11153278866"
    },
    {
      "job": 110318238453,
      "time": 187,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11153344288"
    },
    {
      "job": 110318238506,
      "time": 86,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11153622655"
    },
    {
      "job": 110318238573,
      "time": 90,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11153354055"
    },
    {
      "job": 110316467608,
      "time": 298,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11154325023"
    },
    {
      "job": 110318238459,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11153617835"
    },
    {
      "job": 110318238492,
      "time": 89,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11154365102"
    },
    {
      "job": 110318238644,
      "time": 81,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11153731630"
    },
    {
      "job": 110318238734,
      "time": 84,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11153483114"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/m-signo/actions/runs/36846057618",
  "_status": "success",
  "_upstream": "https://github.com/cran/ptmixed",
  "_commit": {
    "id": "44ef465c2c989c25a6248f5541a689577db81cc8",
    "author": "Mirko Signorelli <msignorelli.rpackages@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1.3\n",
    "time": 1660820402
  },
  "_maintainer": {
    "name": "Mirko Signorelli",
    "email": "msignorelli.rpackages@gmail.com",
    "login": "m-signo",
    "description": "NB: my current github username is mirkosignorelli. This account was created just to redirect people who might use old repository links to the current ones!",
    "uuid": 73277941,
    "orcid": "0000-0002-8102-3356"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "GLMMadaptive",
      "role": "Imports"
    },
    {
      "package": "lme4",
      "role": "Imports"
    },
    {
      "package": "matrixcalc",
      "role": "Imports"
    },
    {
      "package": "moments",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "numDeriv",
      "role": "Imports"
    },
    {
      "package": "tweeDEseq",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "m-signo",
      "count": 11,
      "uuid": 73277941
    }
  ],
  "_userbio": {
    "uuid": 73277941,
    "type": "user",
    "name": "m-signo",
    "followers": 0,
    "description": "NB: my current github username is mirkosignorelli. This account was created just to redirect people who might use old repository links to the current ones!"
  },
  "_downloads": {
    "count": 373,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ptmixed"
  },
  "_devurl": "https://github.com/mirkosignorelli/r",
  "_searchresults": 6,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/ptmixed.html"
  ],
  "_realowner": "m-signo",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2019-02-12"
    },
    {
      "version": "0.0.2",
      "date": "2019-04-23"
    },
    {
      "version": "0.0.3",
      "date": "2019-05-06"
    },
    {
      "version": "0.0.4",
      "date": "2019-05-26"
    },
    {
      "version": "0.1.2",
      "date": "2019-06-17"
    },
    {
      "version": "0.2.1",
      "date": "2019-07-05"
    },
    {
      "version": "0.3.1",
      "date": "2019-09-17"
    },
    {
      "version": "0.4.1",
      "date": "2019-10-23"
    },
    {
      "version": "0.4.2",
      "date": "2020-01-10"
    },
    {
      "version": "0.4.3",
      "date": "2020-02-19"
    },
    {
      "version": "0.5.1",
      "date": "2020-04-09"
    },
    {
      "version": "0.5.2",
      "date": "2020-04-17"
    },
    {
      "version": "0.5.4",
      "date": "2020-06-13"
    },
    {
      "version": "1.0.0",
      "date": "2020-08-27"
    },
    {
      "version": "1.0.1",
      "date": "2020-10-26"
    },
    {
      "version": "1.0.2",
      "date": "2021-01-07"
    },
    {
      "version": "1.0.3",
      "date": "2021-03-02"
    },
    {
      "version": "1.1.0",
      "date": "2021-11-05"
    },
    {
      "version": "1.1.1",
      "date": "2021-12-01"
    },
    {
      "version": "1.1.2",
      "date": "2022-04-01"
    },
    {
      "version": "1.1.3",
      "date": "2022-08-18"
    }
  ],
  "_exports": [
    "loglik.pt.1re",
    "make.spaghetti",
    "nbglm",
    "nbmixed",
    "pmf",
    "ptglm",
    "ptmixed",
    "ranef",
    "simulate_ptglmm",
    "wald.test"
  ],
  "_datasets": [
    {
      "name": "df1",
      "title": "Example dataset with longitudinal counts",
      "object": "df1",
      "file": "df1.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "y",
        "group",
        "time",
        "id",
        "offset"
      ],
      "rows": 18,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "df1",
      "title": "Example dataset with longitudinal counts",
      "topics": [
        "df1"
      ]
    },
    {
      "page": "loglik.pt.1re",
      "title": "Loglikelihood of Poisson-Tweedie generalized linear mixed model with random intercept",
      "topics": [
        "loglik.pt.1re"
      ]
    },
    {
      "page": "make.spaghetti",
      "title": "Generate a spaghetti plot to visualize longitudinal data",
      "topics": [
        "make.spaghetti"
      ]
    },
    {
      "page": "nbglm",
      "title": "Negative binomial generalized linear model",
      "topics": [
        "nbglm"
      ]
    },
    {
      "page": "nbmixed",
      "title": "Negative binomial generalized linear mixed model",
      "topics": [
        "nbmixed"
      ]
    },
    {
      "page": "pmf",
      "title": "Probability mass function plot for a discrete variable",
      "topics": [
        "pmf"
      ]
    },
    {
      "page": "ptglm",
      "title": "Poisson-Tweedie generalized linear model",
      "topics": [
        "ptglm"
      ]
    },
    {
      "page": "ptmixed",
      "title": "Poisson-Tweedie generalized linear mixed model",
      "topics": [
        "ptmixed"
      ]
    },
    {
      "page": "ranef",
      "title": "Compute random effects for Poisson-Tweedie and negative binomial mixed model",
      "topics": [
        "ranef"
      ]
    },
    {
      "page": "simulate_ptglmm",
      "title": "Simulate data from the Poisson-Tweedie generalized linear mixed model",
      "topics": [
        "simulate_ptglmm"
      ]
    },
    {
      "page": "summary.ptglm",
      "title": "Summarizing Poisson-Tweedie and negative binomial GLM estimation results",
      "topics": [
        "summary.ptglm"
      ]
    },
    {
      "page": "summary.ptglmm",
      "title": "Summarizing Poisson-Tweedie and negative binomial mixed model estimation results",
      "topics": [
        "summary.ptglmm"
      ]
    },
    {
      "page": "wald.test",
      "title": "Wald test for regression coefficients",
      "topics": [
        "wald.test"
      ]
    }
  ],
  "_rundeps": [
    "boot",
    "cqn",
    "edgeR",
    "GLMMadaptive",
    "lattice",
    "limma",
    "lme4",
    "locfit",
    "MASS",
    "Matrix",
    "matrixcalc",
    "MatrixModels",
    "matrixStats",
    "mclust",
    "minqa",
    "moments",
    "mvtnorm",
    "nlme",
    "nloptr",
    "nor1mix",
    "numDeriv",
    "quantreg",
    "rbibutils",
    "Rcpp",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "SparseM",
    "statmod",
    "survival",
    "tweeDEseq"
  ],
  "_vignettes": [
    {
      "source": "Overview_functionalities_ptmixed.Rmd",
      "filename": "Overview_functionalities_ptmixed.html",
      "title": "An introduction to the R package ptmixed",
      "author": "Mirko Signorelli",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "What's ptmixed?",
        "Package installation",
        "Option 1: install Bioconductor dependencies directly",
        "Option 2: install Bioconductor dependencies manually",
        "Loading the package",
        "Get started",
        "An overview of the package functionalities",
        "A step by step example",
        "Data preparation",
        "Data visualization",
        "The Poisson-Tweedie generalized linear mixed model",
        "Model Estimation",
        "Viewing parameter estimates, standard errors and p-values",
        "Testing more complex hypotheses",
        "Computing the predicted random effects",
        "Simpler models",
        "Negative binomial generalized linear mixed model",
        "Poisson-Tweedie generalized linear model",
        "Negative binomial generalized linear model",
        "Further details and material"
      ],
      "created": "2020-04-17 12:30:06",
      "modified": "2022-08-18 11:00:02",
      "commits": 7
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "ptmixed",
  "_universes": [
    "m-signo",
    "mirkosignorelli"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-10-01T10:04:50.000Z",
      "distro": "resolute",
      "commit": "44ef465c2c989c25a6248f5541a689577db81cc8",
      "fileid": "https://r2.ropensci.org/593e9821a35a2af90c76c65255b8f06a6143cee2c05c95ce5a4fd70fa7c0d29f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/m-signo/actions/runs/36846057618"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-10-01T10:05:33.000Z",
      "distro": "resolute",
      "commit": "44ef465c2c989c25a6248f5541a689577db81cc8",
      "fileid": "https://r2.ropensci.org/3ae44490cfab1502ad1b6098ffae6072b1f834261d89d614aa53bac2408a4fcc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/m-signo/actions/runs/36846057618"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.3",
      "date": "2026-10-01T10:04:03.000Z",
      "commit": "44ef465c2c989c25a6248f5541a689577db81cc8",
      "fileid": "https://r2.ropensci.org/d6f937127eb3b616104f9fe1d7e52290279ff36958ba105871651da9cf59c1fa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/m-signo/actions/runs/36846057618"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.3",
      "date": "2026-10-01T10:04:11.000Z",
      "commit": "44ef465c2c989c25a6248f5541a689577db81cc8",
      "fileid": "https://r2.ropensci.org/c6b5f35663e0e712066c5335336c282caac3e5a1355639ab0019cd858cd9c38d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/m-signo/actions/runs/36846057618"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.3",
      "date": "2026-10-01T10:04:50.000Z",
      "commit": "44ef465c2c989c25a6248f5541a689577db81cc8",
      "fileid": "https://r2.ropensci.org/720e574ba37332593ac6e8f5921bbddd88ccc93c0a161855442a9fb2c5916539",
      "status": "success",
      "buildurl": "https://github.com/r-universe/m-signo/actions/runs/36846057618"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-10-01T10:04:00.000Z",
      "commit": "44ef465c2c989c25a6248f5541a689577db81cc8",
      "fileid": "https://r2.ropensci.org/005dd019730debc9bb50b252d5dda2f0273b0cbb0c17fda5aa6657781f137cbb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/m-signo/actions/runs/36846057618"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-10-01T10:03:52.000Z",
      "commit": "44ef465c2c989c25a6248f5541a689577db81cc8",
      "fileid": "https://r2.ropensci.org/d006a80acda182a593e6314faab8a1538e955e7327b3402eb37ce29c2ce4d614",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/m-signo/actions/runs/36846057618"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-10-01T10:03:49.000Z",
      "commit": "44ef465c2c989c25a6248f5541a689577db81cc8",
      "fileid": "https://r2.ropensci.org/76fc10015093308d72c30db7a509ca29a5d7abf2e4727c30bcc4532e40d271bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/m-signo/actions/runs/36846057618"
    }
  ]
}