Introduction | What's neat? | What's "network" enrichment analysis? | Get started | A first example | Preparation of the data | Computation of the test | Analysis of the results | A closer look to the package | How to specify the lists of gene sets | Alternative network formats | Network type | Compute the test | Further details and material

Introduction | What's ptmixed? | Package installation | Option 1: install Bioconductor dependencies directly | Option 2: install Bioconductor dependencies manually | Loading the package | Get started | An overview of the package functionalities | A step by step example | Data preparation | Data visualization | The Poisson-Tweedie generalized linear mixed model | Model Estimation | Viewing parameter estimates, standard errors and p-values | Testing more complex hypotheses | Computing the predicted random effects | Simpler models | Negative binomial generalized linear mixed model | Poisson-Tweedie generalized linear model | Negative binomial generalized linear model | Further details and material