neat: Efficient Network Enrichment Analysis Test

Package: neat 1.2.4

neat: Efficient Network Enrichment Analysis Test

Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in Signorelli et al. (2016, <doi:10.1186/s12859-016-1203-6>).

Authors:Mirko Signorelli [aut, cre, cph], Veronica Vinciotti [ctb], Ernst Wit [ctb]

neat_1.2.4.tar.gz
neat_1.2.4.zip(r-4.7)neat_1.2.4.zip(r-4.6)neat_1.2.4.zip(r-4.5)
neat_1.2.4.tgz(r-4.6-any)neat_1.2.4.tgz(r-4.5-any)
neat_1.2.4.tar.gz(r-4.7-any)neat_1.2.4.tar.gz(r-4.6-any)
neat_1.2.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
neat/json (API)

# Install 'neat' in R:

install.packages('neat', repos = c('https://m-signo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mirkosignorelli/r/issues

Datasets:

yeast - List collecting various yeast data

On CRAN:

2.36 score 23 scripts 225 downloads 2 exports 11 dependencies

Last updated from:26dfe0e1d6. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	127
source / vignettes	OK	162
linux-release-x86_64	OK	123
macos-release-arm64	OK	142
macos-oldrel-arm64	OK	102
windows-devel	OK	68
windows-release	OK	82
windows-oldrel	OK	74
wasm-release	OK	104

Exports:neat networkmatrix

Dependencies:cli cpp11 glue igraph lattice lifecycle magrittr Matrix pkgconfig rlang vctrs

An introduction to the R package neat

Rendered fromneat.Rmdusingknitr::rmarkdown

Help page	Topics
neat	neat-package
Performs neat for lists of gene sets	neat neatc pvalue
Creates a network matrix for 'neat'	networkmatrix
Plot method of 'neat'	plot.neat
Print method of 'neat'	print.neat
Summary method of 'neat'	summary.neat
List collecting various yeast data (see 'description')	yeast

Help page

Topics

neat

neat-package

Performs neat for lists of gene sets

neat neatc pvalue

Creates a network matrix for 'neat'

networkmatrix

Plot method of 'neat'

plot.neat

Print method of 'neat'

print.neat