Package: neat 1.2.4

neat: Efficient Network Enrichment Analysis Test

Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in Signorelli et al. (2016, <doi:10.1186/s12859-016-1203-6>).

Authors:Mirko Signorelli [aut, cre, cph], Veronica Vinciotti [ctb], Ernst Wit [ctb]

neat_1.2.4.tar.gz
neat_1.2.4.zip(r-4.5)neat_1.2.4.zip(r-4.4)neat_1.2.4.zip(r-4.3)
neat_1.2.4.tgz(r-4.4-any)neat_1.2.4.tgz(r-4.3-any)
neat_1.2.4.tar.gz(r-4.5-noble)neat_1.2.4.tar.gz(r-4.4-noble)
neat_1.2.4.tgz(r-4.4-emscripten)neat_1.2.4.tgz(r-4.3-emscripten)
neat.pdf |neat.html✨
neat/json (API)
NEWS

# Install 'neat' in R:

install.packages('neat', repos = c('https://m-signo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mirkosignorelli/r/issues

Datasets:

yeast - List collecting various yeast data

On CRAN:

2 exports 0.09 score 11 dependencies 22 scripts 342 downloads

Last updated 8 months agofrom:26dfe0e1d6. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 30 2024
R-4.5-win	OK	Aug 30 2024
R-4.5-linux	OK	Aug 30 2024
R-4.4-win	OK	Aug 30 2024
R-4.4-mac	OK	Aug 30 2024
R-4.3-win	OK	Aug 30 2024
R-4.3-mac	OK	Aug 30 2024

Exports:neat networkmatrix

Dependencies:cli cpp11 glue igraph lattice lifecycle magrittr Matrix pkgconfig rlang vctrs

An introduction to the R package neat

Mirko Signorelli

Rendered fromneat.Rmdusingknitr::rmarkdownon Aug 30 2024.

Last update: 2024-02-02
Started: 2016-08-06

Citation

Readme and manuals

Help Manual

Help page	Topics
neat	neat-package
Performs neat for lists of gene sets	neat neatc pvalue
Creates a network matrix for 'neat'	networkmatrix
Plot method of 'neat'	plot.neat
Print method of 'neat'	print.neat
Summary method of 'neat'	summary.neat
List collecting various yeast data (see 'description')	yeast