Introduction | What's neat? | What's "network" enrichment analysis? | Get started | A first example | Preparation of the data | Computation of the test | Analysis of the results | A closer look to the package | How to specify the lists of gene sets | Alternative network formats | Network type | Compute the test | Further details and material
Package: neat 1.2.4
neat: Efficient Network Enrichment Analysis Test
Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in Signorelli et al. (2016, <doi:10.1186/s12859-016-1203-6>).
Authors:
neat_1.2.4.tar.gz
neat_1.2.4.zip(r-4.7-any)neat_1.2.4.zip(r-4.6-any)neat_1.2.4.zip(r-4.5-any)
neat_1.2.4.tgz(r-4.6-any)neat_1.2.4.tgz(r-4.5-any)
neat_1.2.4.tar.gz(r-4.7-any)neat_1.2.4.tar.gz(r-4.6-any)
neat_1.2.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
neat/json (API)
| # Install 'neat' in R: |
| install.packages('neat', repos = c('https://m-signo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mirkosignorelli/r/issues
Datasets:
- yeast - List collecting various yeast data
Last updated from:26dfe0e1d6. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 108 | ||
| source / vignettes | OK | 206 | ||
| linux-release | OK | 104 | ||
| macos-release | OK | 182 | ||
| macos-oldrel | OK | 183 | ||
| windows-devel | OK | 67 | ||
| windows-release | OK | 65 | ||
| windows-oldrel | OK | 65 | ||
| wasm-release | OK | 87 |
Exports:neatnetworkmatrix
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| neat | neat-package |
| Performs neat for lists of gene sets | neat neatc pvalue |
| Creates a network matrix for 'neat' | networkmatrix |
| Plot method of 'neat' | plot.neat |
| Print method of 'neat' | print.neat |
| Summary method of 'neat' | summary.neat |
| List collecting various yeast data (see 'description') | yeast |